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<title>BioSS:Staff-Dirk Husmeier</title>
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<h2 class="staffb">Dirk Husmeier - students and postdocs</h2>
<img class="smallpic" src="/images/staff/dirksm.jpg" width="48" height="61" alt="small picture of Dirk" /> 
<img class="smallpic" src="../gershen_quantum.gif" width="134" height="62" alt="subject logo" /> 
<p>&nbsp;</p>
<div id="staff">
<h3>Current PhD students</h3>
<ul>
  <li><a href="http://www.bioss.sari.ac.uk/staff/alexm.html">Alexander Vassilios Mantzaris</a> (2007- )</li>
  <li><a href="/staff/dirk/SuperV/Wolfgang/">Frank Dondelinger</a> (2008-) <br /></li>
</ul>
<h3>Former postdoctoral research associates</h3>
<ul>
  <li><a href="http://www.bioss.ac.uk/associates/marco.html">Marco Grzegorczyk</a></li>
  <li><a href="/staff/kuang.html">Kuang Lin</a></li>
</ul>
<h3>Former PhD students</h3>
<ul>
  <li><a href="/staff/dirk/SuperV/Wolfgang/">Wolfgang Lehrach</a> (2003-2007) <br />
      <a href="/staff/dirk/SuperV/PhDtheses/PhDthesis_wolfgang.pdf">PhD thesis: Bayesian machine learning methods for predicting
protein-peptide interactions and detecting mosaic
structures in DNA sequences alignments</a></li>
  <li><a href="/staff/adriano.html">Adriano Velasque Werhli</a> (2004-2007) <br />
      <a href="/staff/dirk/SuperV/PhDtheses/PhDthesis_adriano.pdf">PhD thesis: Reconstruction of gene regulatory networks
from postgenomic data</a><br />
      <a href="http://www.bioss.ac.uk/past_students/adriano.html">Further information and supplementary material</a><br />
</li>
</ul>
<h3>MRes students (1-year research projects)</h3>
<ul>
  <li>Anna Kedzierska (2004-2005)<br />
  <a href="http://www.bepress.com/sagmb/vol5/iss1/art27/">Joint paper:
A heuristic Bayesian method for segmenting DNA sequence alignments and detecting evidence for recombination and gene conversion
</a> 
  </li>
  <li><a href="http://www.bioss.sari.ac.uk/~dirk/SuperV/MChiang/">Ming Tso Chiang</a> (2003-2004)<br />
Dissertation: Detecting recombination and rate variation 
in DNA sequence alignments
</li>
</ul>
<!--<h3>Visiting research student</h3>
<ul>
  <li><a href="http://www.bioss.sari.ac.uk/staff/who.html">who</a><br />
  </li>
</ul>-->
<h3>MSc students 2008 </h3>
<ul>
  <li><a href="http://homepages.inf.ed.ac.uk/alex/msc/project.php?number=P372">Frank Dondelinger </a><br />
<a href="http://www.bioss.ac.uk/student/MScThesis_FrankD.pdf">
Dissertation: Inferring ecological networks from species abundance data: simulation study
</a>
</li>
  <li><a href="http://homepages.inf.ed.ac.uk/alex/msc/project.php?number=P372">Ali Faisal </a><br />
<a href="http://www.bioss.ac.uk/student/MScThesis_AliFaisal.pdf">Dissertation: Inferring ecological networks from species abundance data: application to the European bird atlas project</a>
</li>
  <li><a href="http://homepages.inf.ed.ac.uk/alex/msc/project.php?number=S031">Antonia Mayer </a><br />
Dissertation: Inferring active subnetowrks in the interferon-mediated
immune response
</li>
</ul>
<h3>MSc students 2006 </h3>
<ul>
  <li><a href="http://www.inf.ed.ac.uk/people/students/Alexander_Mantzaris.html">Alexander Vassilios Mantzaris </a><br />
Dissertation: Detecting mosaic structures in DNA sequence alignments
</li>
</ul>
<h3>MSc students 2004 </h3>
<ul>
  <li><a href="/staff/dirk/MSc/2004/Christoforos">Christoforos Anagnostopoulos </a><br />
      <a href="/staff/dirk/students/Christoforos/dissertation.pdf">Dissertation: Learning probabilistic relational models in the context of reverse engineering genetic networks </a><br />
      <a href="/staff/dirk/students/Christoforos/presentation.ppt">Presentation </a> (Powerpoint) <br />
     </li>
  <li><a href="mailto:john.allen@physics.org">John Allen </a><br />
      <a href="/staff/dirk/students/JohnAllen/dissertation_revised.pdf">Dissertation: Bridging microarray platforms to extend the utility of gene expression profiles </a><br />
      <a href="/staff/dirk/students/JohnAllen/software.zip">Software </a></li>
  <li><a href="/staff/dirk/MSc/2004/Fujun">Fujun Ye </a><br />
Dissertation: Population Markov chain Monte Carlo and Genetic Networks<br />
      <a href="/staff/dirk/students/Fujun_Ye/presentation.pdf">Presentation </a></li>
  <li><a href="/staff/dirk/MSc/2004/JiWonYoon">Ji Won Yoon </a><br />
      <a href="/staff/dirk/students/Jiwon_Yoon/dissertation.pdf">Dissertation: Reverse engineering of genetic networks </a><br />
      <a href="/staff/dirk/students/Jiwon_Yoon/presentation.ppt">Presentation </a> </li>
</ul>
<h3>MSc students 2003 </h3>
<ul>
  <li><a href="/staff/dirk/msc/"> Ming Tso Chiang </a><br />
Dissertation: Inferring genetic regulatory interactions with 
dynamic Bayesian networks
</li>
</ul>
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