Plot of the log likelihood during equilibration and sampling

In the figures below, the vertical axis shows the log likelihood, while the horizontal axis shows the number of MCMC steps in units of 100 steps.

Tree height 0.1, no annealing
Tree height 0.1, simulated annealing
Tree height 0.2, no annealing
Tree height 0.2, simulated annealing

Tree height 0.1, no annealing


Tree height 0.1, simulated annealing


Tree height 0.2, no annealing


Tree height 0.2, simulated annealing


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Last modified: March 2002