Software
Dirk Husmeier
Biomathematics and Statistics Scotland (BioSS)
JCMB, The King's Buildings, Edinburgh EH9 3JZ, United Kingdom
Software package written in MATLAB
for inferring dynamic Bayesian networks with MCMC.
Bayesian
Application for
Recombination
and Gene
Conversion
Estimation
BARCE is a C++ program for detecting recombination
breakpoints in four-sequence alignments using
hidden Markov models, Bayesian principles and
Markov chain Monte Carlo sampling.
Probabilistic Divergence Measures for
Detecting Recombination
with Markov Chain Monte Carlo
JAMBE is a software package to detect recombination
in DNA sequence alignments, implementing the method
discussed in
Husmeier D., Wright F. (2001):
"Probabilistic Divergence Measures for Detecting Interspecies Recombination" ,
Bioinformatics 17, Suppl. 1, S123-S131
(also presented at ISMB 2001).
The software package has been written in Java 1.1.
SImulating REcombination in Nucleotide
Sequences
SIRENS is a free program written in MATLAB
for simulating recombination
in DNA sequence alignments of four sequences.
TOpologies in Alignments of DNA Sequences
C program to carry out a quick check for recombination
in a DNA sequence alignment of 3 or 4 taxa.
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