Biomathematics & Statistics Scotland
DBmcmc
Software package written in MATLAB for inferring dynamic Bayesian networks with MCMC.
BARCEBARCE is a C++ program for detecting recombination breakpoints in four-sequence alignments using hidden Markov models, Bayesian principles and Markov chain Monte Carlo sampling.
JAMBEJAMBE is a software package to detect recombination in DNA sequence alignments, implementing the method discussed in Husmeier D., Wright F. (2001): "Probabilistic Divergence Measures for Detecting Interspecies Recombination" , Bioinformatics 17, Suppl. 1, S123-S131 (also presented at ISMB 2001 ).
SIRENS is a free program written in MATLAB for simulating recombination in DNA sequence alignments of four sequences.
TOADSC program to carry out a quick check for recombination in a DNA sequence alignment of 3 or 4 taxa.
Old software
