![[Link Map]](../../icons/indexbar.gif){kind=icon}
FINDING UNUSUAL WORDS IN DNA SEQUENCES |
|
| INTRODUCTION | |
 |
Introduction |
|
DNA sequences and words |
|
Models for DNA sequences |
|
Example of an exceptional word |
| STATISTICAL METHODS | |
|
Introduction |
|
Gaussian approximation of the count |
|
Periodic structure of the words |
|
Compound Poisson approximation of the count |
|
Chen-Stein method |
|
Choice of the model |
|
Choice of the approximation |
| EXAMPLES | |
|
Exceptional 2-letter words |
|
Comparison of exceptional words under two models |
|
Exceptionality of a word and its subwords |
|
How a pyramid is coloured |
|
Comparison of exceptional words in two sequences |
|
Comparison of exceptional words on two phases |
| CONCLUSION | |
|
Summary |
| APPLICATION SOFTWARE | |
|
Available software |
| FURTHER APPLICATIONS AND EXTENSIONS | |
|
Some specific applications |
|
Finding homogeneous regions in DNA sequences |
References |
|
| Glossary | |