BARCE is a C++ program for detecting recombination
breakpoints in four-sequence alignments using
hidden Markov models, Bayesian principles and
Markov chain Monte Carlo sampling.
The algorithm is described in:
The BARCE software package is provided without guarantee
of maintenance or support, and without warranty.
The copyright holder is not
liable for any damages which may result in
any manner from the use of this software.
Permission is granted to copy and use this software package
for personal academic use.
Downloading and Installing the Software
The programs and documentation files are contained
in the zipped tar file
To extract them under UNIX,
give the following commands:
% gunzip BARCE.tar.gz
% tar xvf BARCE.tar
If you use WINDOWS, use a program like WINZIP.
Compiling the Software
To compile the software, type
at the UNIX prompt.
This should work if you have the CC compiler installed
on your system. Otherwise
change the first line in file
Makefile. For example, if you have the
gnu C++ compiler installed,
CC= CC by
CC = g++.
Back to the main page of the manual.
Last modified: March 2002