Search results for year 2014

Result count: 72

Published:

Category: "Refereed journal"

Anderson, H.B., Evans, P.G., Potts, J.M., Harris, M.P. and Wanless, S. (2014). The diet of common guillemot (Uria aalge) chicks provides evidence of changing prey communities in the North Sea. Ibis 156(1), 23-34.

Azevedo, RA., Lea, PJ., Leather, SR., McNicol, J.W., Millman, CA., Haslam, RP. and Valkonen, JPT. (2014). The centenary of Annals of Applied Biology in 2014. Annals of Applied Biology 164(1), 1-7.

Ball, B.C., Griffiths, B., Wheatley, R., Walker, R.L., Rees, R., Watson, C.A., Gordon, H., Hallett, P., McKenzie, B., Nevison, I.M. and Topp, K. (2014). Seasonal nitrous oxide emissions in field soils under soil management of reduced tillage, compost application or organic farming. Agriculture Ecosystems & Envrionment 189, 171-180.

Beale, C.M., Brewer, M.J. and Lennon, J.J. (2014). A new statistical framework for the quantification of covariate associations with species distributions. Methods in Ecology and Evolution 5, 421-432.

Bogdanova, M., Wanless, S., Harris, M.P., Lindstrom, J., Butler, A., Newell, M., Sato, K., Watakuni, Y., Parsons, M. and Daunt, F. (2014). Among-year and within-population variation in foraging distribution of European shags Phalacrocorax aristotelis over a twenty-year period: implications for marine spatial planning. Biological Conservation 170, 292-299.

Brendel, M., Janssen, A., Mayer, C-D. and Pauly, M. (2014). Weighted logrank permutation tests for randomly right censored life science data. Scandinavian Journal of Statistics 41(3), 742-761.

Britton, A.J., Mitchell, R.J., Potts, J.M. and Genney, D.R. (2014). Developing monitoring protocols for rapid surveillance of priority lichen species in Scotland. The Lichenologist 46(3), 471-482.

Buccianti, A., Nisi, B., Martin-Fernandez, J.A. and Palarea Albaladejo, J. (2014). Methods to investigate the chemistry of groundwaters with values for nitrogen compounds below the detection limit. Journal of Geochemical Exploration 141, 78-88.

Burthe, S., Wanless, S., Newell, M., Butler, A. and Daunt, F. (2014). Assessing the vulnerability of the marine bird community in the western North Sea to climate change and other anthropogenic impacts. Marine Ecology Progress Series 507, 277-295.

Cantón, G.J., Katzer, F., Maley, S.W., Bartley, P.M., Benavides, J., Palarea Albaladejo, J., Pang, Y.P., Smith, S., Rocchi, M.S., Buxton, D.A., Innes, E.A. and Chianini, F. (2014). Cytokine expression in the placenta of pregnant cattle after inoculation with Neospora caninum . Veterinary Immunology and Immunopathology 161(1-2), 77-89.

Cantón, G.J., Konrad, J.L., Moore, D.P., Caspe, S.G., Palarea Albaladejo, J., Campero, C.M. and Chianini, F. (2014). Characterization of the immune cell infiltration in the placentas from water buffaloes (Bubalus bubalis) inoculated with Neospora caninum during pregnancy. Journal of Comparative Pathology 150(4), 463-468.

Cantón, G.J., Katzer, F., Maley, S.W., Bartley, P.M., Benavides, J., Palarea Albaladejo, J., Pang, Y.P., Smith, S., Rocchi, M.S., Buxton, D.A., Inglis, N.F. and Chianini, F. (2014). Inflammatory infiltration into placentas of Neospora caninum challenged cattle correlates with clinical outcome of pregnancy. Veterinary Research 45(1), 11.

Chapman, S., Stevens, L.J., Boevink, P.C., Engelhardt, S., Alexander, C.J., Harrower, B., Champouret, N., McGeachy, K., Van Weymers, P.S.M., Chen, X., Birch, P.R.J. and Hein, I. (2014). Detection of the virulent form of AVR3a from Phytophthora infestans following artificial evolution of potato resistance gene R3a. PLoS ONE 9(10), e110158. Public Library of Science, San Francisco, USA.

Dixon, L., Brocklehurst, S., Sandilands, V., Bateson, M., Tolkamp, B.J. and D'Eath, R. (2014). Measuring motivation for appetitive behaviour: food-restricted broiler breeder chickens cross a water barrier to forage in an area of wood shavings without food. PLoS ONE 9(7).

Drew, J.E., Farquharson, A.J., Vase, H., Mayer, C-D., Coates, PJ., Steele, RJ. and Carey, FA. (2014). Predictive gene signatures: molecular markers distinguishing colon adenomatous polyp and carcinoma. PLoS ONE 9(11). PLoS.

Drew, J.E., Farquharson, A.J., Horgan, G.W., Duthie, S.J. and Duthie, G.G. (2014). Postprandial cell defense system responses to meal formulations: stratification through gene expression profiling. Molecular Nutrition & Food Research 58(10), 2066-2079.

Dunn, S.M., Sample, J., Potts, J.M., Abel, C., Cook, Y., Taylor, C., Napier, F. and Vinten, A.J.A. (2014). Recent trends in catchment water quality in Eastern Scotland: elucidating the roles of hydrology and land use. Environmental Science: Processes & Impacts 16(7), 1659-1675.

Elliot, RM., de Roos, B., Duthie, S.J., Bouwman, F.G., Rubio-Aliga, I., Crosley, K., Polley, A.C., Heim, C., Mayer, C-D., Coort, S.J., Evelo, C.T., Mulholland, F., Daniel, H., Mariman, E. and Johnson, I.T. (2014). Transcriptome analysis of peripheral blood mononuclear cells in human subjects following a 36 h fast provides evidence of effects on genes regulating inflammation, apoptosis and energy metabolism. Genes and Nutrition 9(6), 1-11. Springer Verlag.

Elston, D.A., Spezia, L., Baines, D. and Redpath, S. (2014). Working with stakeholders to reduce conflict - modelling the impact of varying hen harrier Circus cyaneus densities on red grouse Lagopus lagopus populations. Journal of Applied Ecology 51, 1236-1245.

Fazey, I., Bunze, L., Msika, J., Pinke, M., Preedy, K., Evely, AC., Lambert, E., Hastings, E., Morris, S. and Reed, MS. (2014). Evaluating knowledge exchange in interdisciplinary and multi-stakeholder research. Global Environmental Change 25, 204-220. Eds. J Barnett, M Betsill, D Conway, L Lebel, K Seto. Elsevier, Amsterdam, Netherlands.

Gamado, K.M., Streftaris, G. and Zachary, S. (2014). Modelling under-reporting in epidemics. Journal of Mathematical Biology 69(3), 737-765. Springer Berlin Heidelberg.

Graham, J., Hackett, C.A., Smith, K., Karley, A., Mitchell, C., Roberts, H. and O'Neill, T. (2014). Genetic and environmental regulation of plant architectural traits and opportunities for pest control in raspberry. Annals of Applied Biology 165, 318-328.

Gratz, S.W., Richardson, A.J., Duncan, G. and Holtrop, G. (2014). Annual variation of dietary deoxynivalenol exposure during years of different Fusarium prevalence: a pilot biomonitoring study. Food Additives and Contaminants Part A: Chemistry Analysis Control Exposure and Risk Assessment 31(9), 1579-1585. Taylor and Francis/CRC Press.

Hackett, C.A., Bradshaw, J.E. and Bryan, G.J. (2014). QTL mapping in autotetraploids using SNP dosage information. Theoretical and Applied Genetics 127(9), 1885-1904.

Hardstaff, J.L., Marion, G., Hutchings, M.R. and White, P.C.L. (2014). Evaluating the tuberculosis hazard posed to cattle from wildlife across Europe. Research in Veterinary Science 97, S86-S93.

Harrison, P.J., Buckland, S.T., Yuan, Y., Elston, D.A., Brewer, M.J., Johnston, A. and Pearce-Higgins, J.W. (2014). Assessing trends in biodiversity over space and time using the example of British breeding birds. Journal of Applied Ecology 51, 1650-1660.

Heath, M.R., Culling, M.A., Crozier, W.W., Fox, C.J., Gurney, W.S.C., Hutchinson, W.F., Nielsen, E.E., O'Sullivan, M., Preedy, K., Righton, D.A., Speirs, D.C., Taylor, M.I., Wright, P.J. and Carvalho, G.R. (2014). Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing. ICES Journal of Marine Science 71(4), 794-807. Oxford University Press, Oxford, UK.

Helliwell, R., Wright, R.F., Jackson-Blake, L., Ferrier, R.C., Aherne, J., Cosby, B.J., Evans, C.D., Forsius, M., Hruska, J., Jenkins, A., Kram, P., Kopáček, J., Majer, V., Moldan, F., Posch, M., Potts, J.M., Rogora, M. and Schöpp, W. (2014). Assessing recovery from acidification of European surface waters in the year 2010: an evaluation of projections made with the MAGIC model in 1995. Environmental Science and Technology 48(22), 13280-13288. American Chemical Society (ACS), Washington, DC.

Herbert, LJ., Vali, L., Hoyle, D., Innocent, G.T., McKendrick, I.J., Pearce, M.C., Mellor, D.J., Porphyre, T., Locking, M., Allison, L.J., Hanson, M.F., Matthews, L., Gunn, G.J., Woolhouse, M.E.J. and Chase-Topping, M.E. (2014). E. coli O157 on Scottish cattle farms: evidence of local spread and persistence using repeat cross-sectional data. BMC Veterinary Research 10(95).

Herwig, A., Campbell, G., Mayer, C-D., Boelen, A., Anderson, RA., Ross, A.W., Mercer, J. and Barrett, P. (2014). A thyroid hormone challenge in hypothyroid rats identifies T3 regulated genes in the hypothalamus and in models with altered energy balance and glucose homeostasis. Thyroid, 1575-1593.

Hindle, M.M., Martin, S.F., Noordally, Z., van Ooijen, G., Barrios-Llerena, M.E., Simpson, I., Le Bihan, T. and Millar, A.J. (2014). The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species. BMC Genomics 15, 644.

Hold, G., Berry, S., Saunders, KA., Drew, J.E., Mayer, C-D., Brooks, H., Gay, NJ., El-Omar, E. and Bryant, CE. (2014). The TLR4 D299G and T399I SNPs are constitutively active to up-regulate expression of trif-dependent genes. PLoS ONE 9(11), e111460. San Francisco, CA: Public Library of Science.

Holden, N., Wright, F., MacKenzie, K., Marshall, J., Mitchell, S., Mahajan, A., Wheatley, R. and Daniell, T. (2014). Prevalence and diversity of Escherichia coli isolated from a barley trial supplemented with bulky organic soil amendments: green compost and bovine slurry. Letters in Applied Microbiology 58, 205-212.

Jimenez de Cisneros, J.P., Stear, M.J., Mair, C., Singleton, D., Stefan, T., Stear, A., Marion, G. and Matthews, L. (2014). An explicit immunogenetic model of gastrointestinal nematode infection in sheep. Journal of the Royal Society Interface 11, 20140416. Royal Society Publshing.

Kaczmarek, A., MacKenzie, K., Kettle, H. and Blok, V. (2014). Influence of temperature on the plant parasitic nematodes Globodera rostochiensis and G. pallida: assessing the impact of soil temperature. Phytopathologia Mediterranea 53(3), 396-405.

Katzer, F., Cantón, G.J., Burrells, A., Palarea Albaladejo, J., Horton, B., Bartley, P.M., Pang, Y.P., Chianini, F., Innes, E.A. and Benavides, J. (2014). Immunization of lambs with the S48 strain of Toxoplasma gondii reduces tissue cyst burden following oral challenge with a complete strain of the parasite. Veterinary Parasitology 206(1-2), 46-56.

Kettle, H., O'Donnelly, R., Marion, G. and Flint, H.J. (2014). pH feedback and phenotypic diversity within bacterial functional groups of the human gut. Journal of Theoretical Biology 342(7), 62-69.

Lau, M.S.Y., Marion, G., Streftaris, G. and Gibson, G. (2014). New model diagnostics for spatiotemporal systems in epidemiology and ecology. Journal of the Royal Society Interface 11, 20131093.

Liu, H., Bayer, M., Druka, A., Russell, J.R., Hackett, C.A., Poland, J., Ramsay, L., Hedley, P.E. and Waugh, R. (2014). An evaluation of genotyping by sequencing to map the Breviaristatum-e (ari-e) locus in cultivated barley. BMC Genomics 15, 104.

Lobley, G.E., Johnstone, J.A., Fyfe, C., Horgan, G.W., Holtrop, G., Bremner, D.M., Broom, J.I., Schweiger, L. and Welch, A. (2014). Glucose uptake by the brain on chronic high-protein weight-loss diets with either moderate or low amounts of carbohydrate. British Journal of Nutrition 11, 586-597.

Mitchell, R.J., Beaton, J.K., Bellamy, P.E., Broome, A., Chetcuti, J., Eaton, S., Ellis, C., Gimona, A., Harmer, R., Hester, A.J., Hewison, R.L., Hodgetts, N.G., Iason, G.R., Kerr, G., Littlewood, N.A., Newey, S., Potts, J.M., Pozsgai, G., Ray, D., Sim, D.A., Stockan, J.A., Taylor, A.F.S., Taylor, P. and Woodward, S. (2014). Ash dieback in the UK: a review of the ecological and conservation implications. Biological Conservation 175, 95-109.

Morris, W., Hancock, R.D., Ducreux, L.J.M., Morris, J.A., USMAN, M., Verrall, S.R., Sharma, S.K., Bryan, G.J., McNicol, J.W. and Hedley, P.E. (2014). Day length dependent restructuring of the leaf transcriptome and metabolome in potato genotypes with contrasting tuberization phenotypes. Plant Cell and Environment 37, 1351-1363.

Neacsu, M., Fyfe, C., Horgan, G.W. and Johnstone, A.M. (2014). Appetite control and biomarkers of satiety with vegetarian (soya) and meat based high-protein diets for weight loss in obese men. American Journal of Clinical Nutrition 100(2), 548-558.

O'Reilly-Wapstra, J.M., Moore, B.D., Brewer, M.J., Beaton, J.K., Sim, D.A., Wiggins, N. and Iason, G.R. (2014). Pinus sylvestris sapling growth and recovery from mammalian browsing. Forest Ecology and Management 325, 18-25.

Pérez-Barbería, F.J., Duff, E.I., Brewer, M.J. and Guinness, F.E. (2014). Evaluation of methods to age Scottish red deer: the balance between accuracy and practicality. Journal of Zoology 294(3), 180-189.

Pai, B., Siripornmongcolchai, T., Berentsen, B., Pakzad, A., Vieuille, C., Pallesen, S., Pajak, M., Simpson, I., Armstrong, J.D., Wibrand, K. and Bramham, CR. (2014). NMDA receptor-dependent regulation of miRNA expression and association with Argonaute during LTP in vivo. Frontiers in Cellular Neuroscience 7(285), doi: 10.3389/fncel.2013.00285.

Palarea Albaladejo, J., Martin-Fernandez, J.A. and Buccianti, A. (2014). Compositional methods for estimating elemental concentrations below the limit of detection in practice using R. Journal of Geochemical Exploration 141, 71-77.

Palarea Albaladejo, J., Martin-Fernandez, J.A. and Olea, R.A. (2014). A bootstrap estimation scheme for chemical compositional data with nondetects. Journal of Chemometrics 28(77), 585-599.

Prentice, J.C., Marion, G., White, P.C.L., Davidson, R.S. and Hutchings, M.R. (2014). Demographic processes drive increases in wildlife disease following population reduction. PLoS ONE 9(5).

Raczynska, K.D., Stepien, A., Kierzkowski, D., Kalak, M., Bajczyk, M., McNicol, J.W., Simpson, C.G., Szweykowska-Kulinska, Z., Brown, J.W.S. and Jarmolowski, A. (2014). The SERRATE protein is involved in alternative splicing in Arabidopsis thaliana. Nucleic Acids Research 42(2), 1224-1244.

Ribeiro, K.M., Braga, R., Horgan, G.W., Ferreira, DD. and Safadi, T. (2014). Principal component analysis in the spectral analysis of the dynamic laser speckle patterns. Food Policy 9, 14009.

Russell, J.R., Hackett, C.A., Hedley, P.E., Liu, H., Milne, L., Bayer, M., Marshall, D., Jorgensen, L., Gordon, S. and Brennan, R.M. (2014). The use of genotyping by sequencing in blackcurrant (Ribes nigrum): developing high-resolution linkage maps in species without reference genome sequences. Molecular Breeding 33, 835-849.

Salonen, A., Lahti, L., Saloharvi, J., Holtrop, G., Korpela, K., Duncan, S.H., Date, P., Farquharson, F., Johnstone, A.M., Lobley, G.E., Louis, P., Flint, H.J. and de Vos, W.M. (2014). Impact of diet and individual variation on intestinal microbiota composition and fermentation products in obese men. International Society for Microbial Ecology Journal 8(11), 2218-2230. Nature Publishing Group.

Schreiber, M., Wright, F., MacKenzie, K., Schwerdt, J.G., Burton, R.A., Fincher, G.B., Marshall, D., Waugh, R. and Halpin, C. (2014). The barley genome sequence assembly reveals three additional members of the CslF(1,3;1,4)-β-glucan synthase gene family. PLoS ONE 9(3), e90888.

Searle, K., Barber, J., Stubbins, F., Labuschagne, K., Carpenter, S., Butler, A., Denison, E., Sanders, C., Mellor, P.S., Wilson, A., Nelson, N., Gubbins, S. and Purse, B.V. (2014). Environmental drivers of Culicoides phenology: how important is species-specific variation when determining disease policy. PLoS ONE 9(11), e111876.

Shepherd, L.V.T., Hackett, C.A., Alexander, C.J., Sungurtas, J., Pont, S.D.A., Stewart, D., McNicol, J.W., Wilcockson, S.J., Leifert, C. and Davies, H.V. (2014). Effect of agricultural production systems on the potato metabolome. Metabolomics 10, 212-224.

Simpson, C.G., Lewandowska, D., Liney, M., Davidson, D., Chapman, S., Fuller, J., McNicol, J.W., Shaw, P. and Brown, J.W.S. (2014). Arabidopsis PTB1 and PTB2 proteins negatively regulate splicing of a mini-exon splicing reporter and affect alternative splicing of endogenous genes differentially. New Phytologist 203(2), 424-436.

Song, Y., Glasbey, C.A., Horgan, G.W., Polder, G., Dieleman, A. and van der Heijden, G.W.A.M. (2014). Automatic fruit recognition and counting from multiple images. Biosystems Engineering 118, 203-215.

Song, Y., Glasbey, C.A., Polder, G. and van der Heijden, G.W.A.M. (2014). Non-destructive automatic leaf area measurements by combining stereo and time-of-flight images. IET Computer Vision 8, 391-403.

Spezia, L., Cooksley, S., Brewer, M.J., Donnelly, D. and Tree, A. (2014). Modelling species abundance in a river by negative binomial hidden Markov models. Computational Statistics and Data Analysis 71, 599-614.

Spezia, L., Cooksley, S., Brewer, M.J., Donnelly, D. and Tree, A. (2014). Mapping species distributions in one dimension by non-homogeneous hidden Markov models: freshwater pearl mussels in the River Dee. Environmental and Ecological Statistics 21, 487-505.

Stubbs, J., O'Reilly, L., Whybrow, S., Fuller, Z., Johnstone, A.M., Livingstone, B., Ritz, P. and Horgan, G.W. (2014). Measuring the difference between actual and reported food intakes in the context of energy balance under laboratory conditions. British Journal of Nutrition 111(11), 2032-2043.

Sutherland, C., Elston, D.A. and Lambin, X. (2014). A demographic, spatially explicit patch occupancy model of metapopulation dynamics and persistence. Ecology 95, 3149-3160.

Theobald, C.M. and Davie, A.M. (2014). Group testing, the pooled hypergeometric distribution, and estimating the number of defectives in small populations. Communications in Statistics-Theory and Methods 43, 3019-3026.

Van der Jagt, A.P.N., Craig, T., Anable, J., Brewer, M.J. and Pearson, D.G. (2014). Unearthing the picturesque: the validity of the preference matrix as a measure of landscape aesthetics. Landscape and Urban Planning 124, 1-13.

Wallace, J.M., Bhattacharya, S., Campbell, D.M. and Horgan, G.W. (2014). Inter-pregnancy weight change impacts placental weight and is associated with the risk of adverse pregnancy outcomes in the second pregnancy. BMC Pregnancy and Childbirth 14, 40.

Whitelaw, N., Bhattacharya, S., Hoad, G., Horgan, G.W., Hamilton, M. and Haggarty, P. (2014). Epigenetic status in the offspring of spontaneous and assisted conception. Human Reproduction 29(7), 1452-1458.

Winder, L., Alexander, C.J., Woolley, C., Perry, J.N. and Holland, J.M. (2014). Cereal aphid colony turnover and persistence in winter wheat. PLoS ONE 9(9), e106822. Public Library of Science, San Francisco, USA.

Zhang, X., McGeoch, S.C., Johnstone, A.M., Holtrop, G., Sneddon, A., MacRury, S.M., Megson, I.L., Pearson, D.W., Abraham, P., de Roos, B., Lobley, G.E. and O'Kennedy, N. (2014). Platelet-derived microparticle count and surface molecule expression differ between subjects with and without type 2 diabetes, independently of obesity status. Journal of Thrombosis and Thrombolysis 37(4), 455-463. Springer Verlag.

Zhang, X., McGeoch, S.C., Megson, I.L., MacRury, S.M., Johnstone, A.M., Abraham, P., Pearson, D.W., de Roos, B., Holtrop, G., O'Kennedy, N. and Lobley, G.E. (2014). Oat-enriched diet reduces inflammatory status assessed by circulating cell-derived microparticle concentrations in type 2 diabetes. Molecular Nutrition & Food Research 58(6), 1322-1332.

Category: "Book Chapter"

Martínez-Silva, I., Sestelo, M., Bidegain, G., Lorenzo-Arribas, A. and Roca-Pardinas, J. (2014). Nonparametric regression applied to sea urchin growth. In "Sea urchins: habitat, embryonic development and importance in the environment". Nova Science Publishers.

Wright, K.M. and MacKenzie, K. (2014). Probing protein targeting to plasmodesmata using fluorescence recovery after photo-bleaching. In "The Methods in Molecular Biology series". Humana Press.

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