Search results for year 2012

Result count: 80

Published:

Category: "Refereed journal"

Aderhold, A., Husmeier, D., Lennon, J.J., Beale, C.M. and Smith, V.A. (2012). Hierarchical Bayesian models in ecology: reconstructing species interaction networks from non-homogeneous species abundance data. Ecological Informatics 11, 55-64.

Adriaens, M.E., Jaillard, M., Eijssen, L.M.T., Mayer, C-D. and Evelo, C. (2012). An evaluation of two-channel ChIP-on-chip and DNA methylation microarray normalization strategies. BMC Genomics 13(42).

Bachmair, E-M., Bots, M.L., Mennen, L.I., Kelder, T., Evelo, C., Horgan, G.W., Ford, I. and de Roos, B. (2012). Effect of supplementation with an 80:20 cis9, trans11 conjugated linoleic acid blend on the human platelet proteome. Molecular Nutrition & Food Research 56(7), 1148-1159.

Bartley, K., Huntley, J.F., Wright, H., Nath, M. and Nisbet, A.J. (2012). Assessment of cathepsin D and L-like proteinases of poultry red mite, Dermanyssus gallinae (De Geer), as potential vaccine antigens. Parasitology 139(6), 755-765.

Bartley, P.M., Wright, S.E., Maley, S.W., Macaldowie, C.N., Nath, M., Hamilton, C.M., Katzer, F., Buxton, D.A. and Innes, E.A. (2012). Maternal and foetal immune responses of cattle following an experimental challenge with Neospora caninum at day 70 of gestation. Veterinary Research 43(1), 38.

Baxter, E.M., Jarvis, S., Palarea Albaladejo, J. and Edwards, S.A. (2012). The weaker sex? The propensity for male-biased piglet mortality. PLoS ONE 7(1), e30318, doi:10.1371/journal.pone. Blackwell and Hall, Almería, Spain.

Beattie, J.H., Gordon, M-J., Duthie, S.J., McNeil, C.J., Horgan, G.W., Nixon, G.F., Feldmann, J. and Kwun, I.S. (2012). Suboptimal dietary zinc intake promotes vascular inflammation and atherogenesis in a mouse model of atherosclerosis. Molecular Nutrition & Food Research 56, 1097-1105.

Benavides, J., Katzer, F., Maley, S.W., Bartley, P.M., Cantón, G.J., Palarea Albaladejo, J., Purslow, C., Pang, Y.P., Rocchi, M.S., Chianini, F., Buxton, D.A. and Innes, E.A. (2012). High rate of transplacental infection and transmission of Neospora caninum following experimental challenge of cattle at day 210 of gestation. Veterinary Research 43(1), 83.

Bessell, P.R., Rotariu, O., Innocent, G.T., Smith-Palmer, A., Strachan, N.J.C., Forbes, K.J., Cowden, J., Reid, S.W.J. and Matthews, L. (2012). Using sequence data to identify alternative routes and risk of infection: a case-study of campylobacter in Scotland. BMC Infectious Diseases 12. Blackwell and Hall, Almería, Spain.

Birkel, C., Paroli, R., Spezia, L., Dunn, S.M., Tetzlaff, D. and Soulsby, C. (2012). A new approach to simulating stream isotope dynamics using Markov switching autoregressive models. Advances in Water Resources 46, 20-30.

Birkel, C., Soulsby, C., Tetzlaff, D., Dunn, S.M. and Spezia, L. (2012). High-frequency storm event isotope sampling reveals time-variant transit time distributions and influence of diurnal cycles. Hydrological Processes 26, 308-316.

Buckland, S.T., Baillie, S.R., Dick, J.McP., Elston, D.A., Magurran, A.E., Scott, E.M., Smith, R.I., Somerfield, P.J., Studney, A.C. and Watt, A.D. (2012). How should regional biodiversity be monitored. Environmental and Ecological Statistics 19, 601-626.

Burgess, S., Innocent, G.T., Nunn, F., Frew, D., Kenyon, F., Nisbet, A.J. and Huntley, J.F. (2012). The use of a Psoroptes ovis serodiagnostic test for the analysis of a natural outbreak of sheep scab. Parasites and Vectors 5(7).

Burgess, C.G.S., Bartley, Y., Redman, E., Skuce, P.J., Nath, M., Whitelaw, F., Tait, A., Gilleard, J.S. and Jackson, F. (2012). A survey of the trichostrongylid nematode species present on UK sheep farms and associated anthelmintic control practices. Veterinary Parasitology 189(2-4), 299-307.

Burthe, S., Daunt, F., Butler, A., Elston, D.A., Frederiksen, M., Johns, D., Newell, M., Thackeray, S.J. and Wanless, S. (2012). Phenological trends and trophic mismatch across multiple levels of a North Sea pelagic food web. Marine Ecology Progress Series 454, 119-133.

Catterall, S., Cook, A.R., Marion, G., Butler, A. and Hulme, P.E. (2012). Accounting for uncertainty in colonisation times: a novel approach to modelling the spatio-temporal dynamics of alien invasions using distribution data. Ecography 35(10), 901-911.

Chase-Topping, M.E., Rosser, T., Allison, L.J., Courcier, E., Evans, J., McKendrick, I.J., Pearce, M.C., Handel, I., Caprioli, A., Karch, H., Hanson, M.F., Pollock, K.G.J., Locking, M., Woolhouse, M.E.J., Matthews, L., Low, J.C. and Gally, D.L. (2012). Pathogenic potential to humans of bovine Escherichia coli O26 in Scotland. Emerging Infectious Diseases 18(3), 439-448.

Clark, K.E., Hartley, S.E., Brennan, R.M., MacKenzie, K. and Johnson, S.N. (2012). Investigating preference-performance relationships in aboveground-belowground life cycles: a laboratory and field study with the vine weevil (Otiorhynchus sulcatus). Bulletin of Entomological Research 102, 63-70.

Clark, K.E., Hartley, S.E., Brennan, R.M., Jennings, S.N., McMenemy, L.S., McNicol, J.W., Mitchell, C. and Johnson, S.N. (2012). Effects of cultivar and egg density on a colonising vine weevil (Otiorhynchus sulcatus) population and its impacts on red raspberry growth and yield. Crop Protection 32, 76-82.

Clark, K.E., Hartley, S.E., Brennan, R.M., MacKenzie, K. and Johnson, S.N. (2012). Oviposition and feeding behaviour by the vine weevil Otiorhynchus sulcatus on red raspberry: effects of cultivars and plant nutritional status. Agricultural and Forest Entomology 14(2), 157-163.

Cole, L., Brocklehurst, S., Elston, D.A. and McCracken, D. (2012). Riparian field margins: can they enhance the functional structure of ground beetle (Coleoptera: Carabidae) assemblages in intensively managed grassland landscapes. Journal of Applied Ecology 49(6), 1384-1395.

Cole, L., Brocklehurst, S., McCracken, D., Harrison, W. and Robertson, D. (2012). Riparian field margins: their potential to enhance biodiversity in intensively managed grasslands. Insect Conservation and Diversity 5(1), 86-94.

Cooke, D.E.L., Cano, L.M., Raffaele, S., Bain, R.A., Cooke, L.R., Etherington, G.J., Deahl, K.L., Farrer, R.A., Gilroy, E.M., Goss, E.M., Gruenwald, N.J., Hein, I., MacLean, D., McNicol, J.W., Randall, E., Oliva, R.F., Pel, M.A., Shaw, D.S., Squires, J.N., Taylor, M.C., Vleeshouwers, V.G.A.A., Birch, P.R.J., Lees, A.K. and Kamoun, S. (2012). Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLoS Pathogens 8(10), e1002940.

Cooksley, S., Brewer, M.J., Donnelly, D., Spezia, L. and Tree, A. (2012). Impacts of artificial structures on the freshwater pearl mussel Margaritifera margaritifera in the River Dee, Scotland. Aquatic Conservation: Marine and Freshwater Ecosystems 22, 318-330.

Daniell, T.J., Davidson, J., Alexander, C.J., Caul, S. and Roberts, D.M. (2012). Improved real-time PCR estimation of gene copy number in soil extracts using an artificial reference. Journal of Microbiological Methods 91(1), 38-44.

Davidson, R.S., McKendrick, I.J., Wood, J.C., Marion, G., Greig, A., Stevenson, K., Sharp, J.M. and Hutchings, M.R. (2012). Accounting for uncertainty in model-based prevalence estimation: paratuberculosis control in dairy herds. BMC Veterinary Research 8, 159.

Deflorio, G., Horgan, G.W., Jaspars, M. and Woodward, S. (2012). Defence response of Sitka spruce before and after inoculation with Heterobasidion annosum: 1H NMR fingerprinting of bark and sapwood metabolites. Analytical and Bioanalytical Chemistry 402(10), 3333-3344.

Demars, B.O.L., Potts, J.M., Trémolières, M., Thiébaut, G., Gougelin, N. and Nordmann, V. (2012). River macrophyte indices: not the Holy Grail!. Freshwater Biology 57(8), 1745-1759.

Denwood, M.J., Love, S., Innocent, G.T., Matthews, L., McKendrick, I.J., Hillary, N., Smith, A. and Reid, S.W.J. (2012). Quantifying the sources of variability in equine faecal egg counts: implications for improving the utility of the method. Veterinary Parasitology 188, 120-126.

Dobson, P., Graham, J., Stewart, D., Brennan, R.M., Hackett, C.A. and McDougall, G. (2012). Over-seasons analysis of quantitative trait loci affecting phenolic content and antioxidant capacity in raspberry. Journal of Agricultural and Food Chemistry 60(21), 5360-5366.

Dobson, G., Vasukuttan, V. and Alexander, C.J. (2012). Evaluation of different protocols for the analysis of lipophilic plant metabolites by gas chromatography-mass spectrometry using potato as a model. Metabolomics 8(5), 880-893.

Fox, N., Marion, G., Davidson, R.S., White, P.C.L. and Hutchings, M.R. (2012). Livestock helminths in a changing climate: approaches and restrictions to meaningful predictions. Animals 2, 93-107.

Getachew, A.M., Innocent, G.T., Proudman, C.J., Trawford,, A., Feseha, G., Reid, S.W.J., Faith, B. and Love, S. (2012). Equine cestodosis: a sero-epidemiological study of Anoplocephala perfoliata infection in Ethiopia. Veterinary Research Communications 36(2), 93-98.

Getachew, A.M., Innocent, G.T., Trawford,, A., Reid, S.W.J. and Love, S. (2012). Gasterophilosis: a major cause of rectal prolapse in working donkeys in Ethiopia. Tropical Animal Health and Production 44(4), 757-762.

Grzegorczyk, M. and Husmeier, D. (2012). A non-homogeneous dynamic Bayesian network with sequentially coupled interaction parameters for applications in systems and synthetic biology. Statistical Applications in Genetics and Molecular Biology 11(4).

Halliday, A.M., Lainson, F.A., Yaga, R., Inglis, N.F., Bridgett, S., Nath, M. and Knox, D.P. (2012). Transcriptional changes in Teladorsagia circumcincta upon encountering host tissue of differing immune status. Parasitology 139(3), 387-405.

Hardstaff, J.L., Bulling, M.T., Marion, G., Hutchings, M.R. and White, P.C.L. (2012). Impact of external sources of infection on the dynamics of bovine tuberculosis in badger populations. BMC Veterinary Research 8(92), DOI: 10.1186/1746-6148-8-92.

Hoggard, N., Cruickshank, M., Moar, K.M., Bashir, S. and Mayer, C-D. (2012). Using gene expression to predict differences in the secretome of human omental vs subcutaneous adipose tissue. Obesity 20(6), 1158-67.

Holtrop, G., Johnstone, A.M., Fyfe, C. and Gratz, S.W. (2012). Diet composition is associated with endogenous formation of N-nitroso compounds in obese men. Journal of Nutrition 142(9), 1652-1658.

Horgan, G.W. and Whybrow, S. (2012). Associations between fat, sugar and other macronutrient intakes in the National Diet and Nutrition Survey. Nutrition Bulletin 37, 213-223.

Hughes, V.M., Garcia-Sanchez, A., Smith, S., McLean, K., Lainson, F.A., Nath, M. and Stevenson, K. (2012). Proteome-determined type-specific proteins of Mycobacterium avium subspecies paratuberculosis. Veterinary Microbiology 158(1-2), 153-162.

Humphry, R.W., Bruelisauer, F., McKendrick, I.J., Nettleton, P. and Gunn, G.J. (2012). Prevalence of antibodies to bovine viral diarrhoea virus in bulk tank milk and associated risk factors in Scottish dairy herds. Veterinary Record 171(18), 445.

Jones, M.A., Williams, B.A., McNicol, J.W., Simpson, C.G., Brown, J.W.S. and Harmer, S.L. (2012). Mutation of Arabidopsis SPLICEOSOMAL TIMEKEEPER LOCUS 1 causes Circadian Clock Defects. The Plant Cell Online 24(10), 4066-4082.

Jupe, F., Pritchard, L., Etherington, G.J., MacKenzie, K., Cock, P.J.A., Wright, F., Sharma, S.K., Bolser, D., Bryan, G.J., Jones, J.D.G. and Hein, I. (2012). Identification and localisation of the NB-LRR gene family within the potato genome. BMC Genomics 13(75).

Kalyna, M., Simpson, C.G., Syed, N H., Lewandowska, D., Marquez, Y., Kusenda, B., Marshall, J., Fuller, J., Cardle, L., McNicol, J.W., Dinh, H Q., Barta, A. and Brown, J.W.S. (2012). Alternative splicing and nonsense-mediated decay modulate expression of important regulatory genes in Arabidopsis. Nucleic Acids Research 40(6), 2454 - 2469.

Lapierre, H., Holtrop, G., Calder, A.G., Renaud, J. and Lobley, G.E. (2012). Is D-methionine bioavailable to the dairy cow. Journal of Dairy Science 95(1), 353-362.

Last, F. and Roberts, A.M.I. (2012). Onset of flowering in biennial and perennial garden plant: association with variable weather and changing climate between 1978 and 2007. Sibbaldia 10, 85-132.

Lees, A.K., Stewart, J.A., Lynott, J.S., Carnegie, S.F., Campbell, H. and Roberts, A.M.I. (2012). The effect of a dominant Phytophthora infestans genotype (13_A2) in Great Britain on host resistance to foliar late blight in commercial potato cultivars. Potato Research 55(2), 125-134.

Linder, H.P., Bykova, O., Dyke, J., Etienne, R., Hickler, T., Kühn, I., Marion, G., Ohlemüller, R., Schymanski, S.J. and Singer, A. (2012). Biotic modifiers, environmental modulation and species distribution models. Journal of Biogeography 39(12), 2179-2190.

Lockyer, A.E., Emery, A.M., Kane, R.A., Walker, A.J., Mayer, C-D., Mitta, G., Costeau, C., Coen, M.A., Hanelt, B., Rollinson, D., Noble, L.R. and Jones, C.S. (2012). Early differential gene expression in haemocytes from resistant and susceptible biomphalaria glabrata strains in response to Schistosoma mansoni. PLoS ONE 7(12), e511020.

Macdiarmid, J., Kyle, J., Horgan, G.W., Loe, J., Fyfe, C., Johnstone, A.M. and McNeill, G. (2012). Sustainable diets for the future: can we contribute to reducing greenhouse gas emissions by eating a healthy diet. American Journal of Clinical Nutrition 96(3), 632-639.

MacKenzie, K. and Hackett, C.A. (2012). Association mapping in a simulated barley population. Euphytica 183(3), 337-347.

Marion, G., McInery, G.J., Pagel, J., Catterall, S., Cook, A.R., Hartig, F. and O'Hara, R.B. (2012). Parameter and uncertainty estimation for process-oriented population and distribution models: data, statistics and the niche. Journal of Biogeography 39(12), 2225-2239.

Martin-Fernandez, J.A., Hron, K., Templ, M., Filzmoser, P. and Palarea Albaladejo, J. (2012). Model-based replacement of rounded zeros in CODA: classical and robust approaches. Computational Statistics and Data Analysis 56(2012), 2688-2704.

McIntosh, F.M., Maison, N., Holtrop, G., Young, P., Stevens, V.J., Ince, J., Johnstone, A.M., Lobley, G.E., Flint, H.J. and Louis, P. (2012). Phylogenetic distribution of genes encoding beta-glucuronidase activity in human colonic bacteria and the impact of diet on faecal glycosidase activities. Environmental Microbiology 14(8), 1876-1887.

McLaggan, D., Amezaga, M.R., Petra, E., Frost, A., Duff, E.I., Rhind, S.M., Fowler, P.A., Glover, L.A. and Lagido, C. (2012). Impact of sublethal levels of environmental pollutants found in sewage sludge on a novel Caenorhabditis elegans model biosensor. PLoS ONE 7(10), e46503.

Mitchell, R.J., Hester, A.J., Campbell, C.D., Chapman, S.J., Cameron, C.M., Hewison, R.L. and Potts, J.M. (2012). Explaining the variation in the soil microbial community: do vegetation composition and soil chemistry explain the same or different parts of the microbial variation. Plant and Soil 351, 355-362.

Mitchell, R.J., Keith, A.M., Potts, J.M., Ross, J.M., Reid, E.J. and Dawson, L.A. (2012). Overstory and understory vegetation interact to alter soil community composition and activity. Plant and Soil 352, 65-84.

O'Brien, S., Webb, A., Brewer, M.J. and Reid, J.B. (2012). Use of kernel density estimation and maximum curvature to set Marine Protected Area boundaries: identifying a Special Protection Area for wintering red-throated divers in the UK. Biological Conservation 156, 15-21.

Palarea Albaladejo, J., Martin-Fernandez, J.A. and Soto, J.A. (2012). Dealing with distances and transformations for fuzzy C-means clustering of compositional data. Journal of Classification 29(2), 144-169. Springer Verlag.

Roberts, A.M.I. (2012). Comparison of regression methods for phenology. International Journal of Biometeorology 56(4), 707-717.

Rodríguez-Gutiérrez, G., Duthie, G.G., Wood, S., Morrice, P.C., Nicol, F., Reid, M., Cantlay, L., Kelder, T., Horgan, G.W., Guzman, J.F-B. and de Roos, B. (2012). Alperujo extract, hydroxytyrosol, and 3,4-dihydroxyphenylglycol are bioavailable and have antioxidant properties in vitamin E-deficient rats:a proteomics and network analysis approach. Molecular Nutrition & Food Research 56(7), 1131-1147.

Rungapamestry, V., McMonagle, J., Reynolds, C., Rucklidge, G., Reid, M., Duncan, G., Ross, K., Horgan, G.W., Toomey, S., Moloney, A.P., de Roos, B. and Roche, H.M. (2012). Inter-organ proteomic analysis reveals insights into the molecular mechanisms underlying the anti-diabetic effects of cis-9, trans-11-conjugated linoleic acid in ob/ob mice. Proteomics 12(3), 461-476.

Russell, G.C., Benavides, J., Grant, D.M., Todd, H., Thomson, J., Puri, V., Nath, M. and Haig, D. (2012). Host gene expression changes in cattle infected with Alcelaphine herpesvirus 1. Virus Research 169(1), 246-254.

Sutherland, C., Elston, D.A. and Lambin, X. (2012). Multi-scale processes in metapopulations: contributions of stage structure, rescue effect and correlated extinctions. Ecology 93, 2465-2473.

Tannock, G.W., Wilson, C., Loach, D., Cook, G.M., Eason, J., O'Toole, P.W., Holtrop, G. and Lawley, B. (2012). Resource partitioning in relation to cohabitation of Lactobacillus species in the mouse forestomach. International Society for Microbial Ecology Journal 6(5), 927-938.

Theobald, C.M., Chatterjee, A. and Horgan, G.W. (2012). A hierarchical Bayesian mixture model for repeated dietary records. Food and Chemical Toxicology 50, 320-327.

Thies, F., Masson, L., Rudd, A., Vaughan, N., Tsang, C., Brittenden, J., Simpson, W.G., Duthie, S.J., Horgan, G.W. and Duthie, G.G. (2012). Effect of a tomato-rich diet on markers of cardiovascular disease risk in moderately overweight, disease-free, middle-aged adults: a randomized controlled trial. American Journal of Clinical Nutrition 95(5), 1013-1022.

Thonur, L., Maley, M., Gilray, J.A., Crook, T., Laming, E., Turnbull, D., Nath, M. and Willoughby, K. (2012). One-step multiplex real time RT-PCR for the detection of bovine respiratory syncytial virus, bovine herpesvirus 1 and bovine parainfluenza virus 3. BMC Veterinary Research 8, 37.

van der Heijden, G.W.A.M., Song, Y., Horgan, G.W., Polder, G., Dieleman, A., Bink, M., Palloix, A., van Eeuwijk, F. and Glasbey, C.A. (2012). SPICY: towards automated phenotyping of large pepper plants in the greenhouse. Functional Plant Biology 39(10-11), 870-877.

Wallace, J.M., Horgan, G.W. and Bhattacharya, S. (2012). Placental weight and efficiency in relation to maternal body mass index and the risk of pregnancy complications in women delivering singleton babies. Placenta 33(8), 611-618.

Wemelsfelder, F., Hunter, E.A., Paul, E.S. and Lawrence, A.B. (2012). Assessing pig body language: agreement and consistency between pig farmers, veterinarians, and animal activists. Journal of Animal Science 90(10), 3652-3665.

Wheelhouse, N.M., Sait, M., Aitchison, K., Livingstone, M., Wright, F., McLean, K., Inglis, N.F., Smith, D.G.E. and Longbottom, D. (2012). Processing of Chlamydia abortus polymorphic membrane protein 18D during the chlamydial developmental cycle. PLoS ONE 7(11).

White, P.J., Broadley, M.R., Thompson, J.A., McNicol, J.W., Crawley, M.J., Poulton, P.R. and Johnston, A.E. (2012). Testing the distinctness of shoot ionomes of angiosperm families using the Rothamsted Park grass continuous hay experiment. New Phytologist 196(1), 101-9.

Wilson, F.A., Holtrop, G., Calder, C.A., Anderson, S.E., Lobley, G.E. and Rees, W.D. (2012). Effects of methyl-deficient diets on methionine and homocysteine metabolism in the pregnant rat. American Journal of Physiology - Endocrinology and Metabolism 302(12), E1531-E1540.

Wilson, K., Sammin, D., Harmeyer, S., Nath, M., Livingstone, M. and Longbottom, D. (2012). Seroprevalence of chlamydial infection in cattle in Ireland. Veterinary Journal 193(2), 583-585.

Category: "Book Chapter"

Brennan, R.M., Russell, J.R., Jorgensen, L., Abreu, I., Gordon, S., Jarret, D. and Hackett, C.A. (2012). Improving breeding efficiency in blackcurrant - the application of new selection techniques in Ribes. In "10th International Rubus and Ribes Symposium, Acta Horticulturae 946", 157-160. Eds. Tanovic B. International Society for Horticultural Science, Leuven, Belgium.

Dieleman, A., Magan, J.J., Wubs, M., Palloix, A., Lenk, S., Glasbey, C.A. and van Eeuwijk, F. (2012). Large scale phenotyping and data analysis of pepper genotypes in the EU-SPICY project. In "XXVIII International Horticultural Congress on Science and Horticulture for People (IHC2010): International Symposium on Genomics and Genetic Transformation of Horticultural Crops. Acta Horticulturae 929", 299-306. Eds. R.E. Litz, K.M. Folta, M. Talon and F. Pliego Alfaro. International Society for Horticultural Science.

Horgan, G.W. and Glasbey, C.A. (2012). Image Analysis. In "Encyclopedia of Environmetrics, 2nd edition", 1329-1332. Eds. A.-H. El-Shaarawi and W. Piegorsch. Wiley, Chichester.

Mayes, R.W., Brewer, M.J., Dawson, L.A. and Ross, J.M. (2012). An objective method for comparing unresolved complex mixture (UCM) 'humps' in gas chromatograms. In "Environmental Forensics: Proceedings of the 2011 INEF Conference". Eds. Robert D. Morrison, Gwen O'Sullivan. Royal Society of Chemistry, Cambridge.

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