Search results for year 2011

Result count: 79


Category: "Refereed journal"

Adams, T., Ackland, G., Marion, G. and Edwards, C. (2011). Understanding plantation transformation using a size-structured spatial population model. Forest Ecology and Management 261, 799-809.

Adams, T., Ackland, G., Marion, G. and Edwards, C. (2011). Effects of local interaction and dispersal in size-structured model populations. Ecological Modelling 222(8), 1414-1422.

Baker, R.H., Buschbaum, S., Matthews, J.B., McKendrick, I.J., Schnieder, T., Strube, C. and Nisbet, A.J. (2011). GTP-Cyclohydrolase and development in Teladorsagia circumcincta and Dictyocaulus viviparus (Nematoda: Strongylida). Experimental Parasitology 128, 309-317.

Ballingall, K.T., Nath, M., Holliman, A., Laming, E., Steele, P.J. and Willoughby, K. (2011). Lack of evidence for an association between MHC diversity and the development of bovine neonatal pancytopenia in Holstein dairy cattle. Veterinary Immunology and Immunopathology 141(1-2), 128-132.

Bayer, M., Milne, I., Gordon, S., Shaw, P., Cardle, L., Wright, F. and Marshall, D. (2011). Comparative visualization of genetic and physical maps with Strudel. Bioinformatics 27(9), 1307-1308.

Beattie, J.H., Nicol, F., Gordon, M-J., Reid, M., Cantlay, L., Horgan, G.W., Kwun, I.S., Ahn, J.Y. and Ha, T.Y. (2011). Ginger phytochemicals mitigate the obesogenic effects of a high-fat diet in mice: A proteomic and biomarker network analysis. Molecular Nutrition & Food Research 55, S203-13.

Belanche, A.B., Abecia, L., Holtrop, G., Guada, J.A., Castrillo, C., de la Fuente, G. and Balcells, J. (2011). Study of the effect of presence or absence of protozoa on rumen fermentation and microbial protein contribution to the chyme. Journal of Animal Science 89(12), 4163-4174.

Belenguer, A., Holtrop, G., Duncan, S.H., Anderson, S.E., Calder, A.G., Flint, H.J. and Lobley, G.E. (2011). Rates of production and utilisation of lactate by microbial communities from the human colon. FEMS Microbiology Ecology 77(1), 107-119.

Benavides, J., Maley, S.M., Pang, Y.P., Palarea Albaladejo, J., Eaton, S.L., Katzer, F., Innes, E.A., Buxton, D.A. and Chianini, F. (2011). Development of lesions and tissue distribution of parasite in lambs orally infected with sporulated oocysts of Toxoplasma gondii. Veterinary Parasitology 179(2011), 209-215.

Bosch, M., Mayer, C-D., Cookson, A. and Donnison, I. (2011). Identification of genes involved in cell wall biogenesis in grasses by differential gene expression profiling of elongating and non-elongating maize internodes. Journal of Experimental Botany 62(10), 3545-3561.

Bouwman, F.G., de Roos, B., Rubio-Aliaga, I., Crosley, K., Duthie, S.J., Mayer, C-D., Horgan, G.W., Polley, A.C., Heim, C., Coort, S.L.M., Evelo, C.T., Mulholland, F., Johnson, I.T., Elliott, R., Daniel, H. and Mariman, E.C.M. (2011). 2D-electrophoresis and multiplex immunoassay proteomic analysis of different body fluids and cellular components reveal known and novel markers for extended fasting. BMC Medical Genomics 4(24).

Brewer, M.J., Tetzlaff, D., Malcolm, I.A. and Soulsby, C. (2011). Source distribution modelling for end-member mixing in hydrology. Environmetrics 22, 921-932.

Burthe, S., Butler, A., Searle, K.R., Hall, S.J.G., Thackeray, S.J. and Wanless, S. (2011). Demographic consequences of increased winter births in a large aseasonally breeding mammal (Bos taurus) in response to climate change. Journal of Animal Ecology 80(6), 1134-1144.

Comadran, J., Ramsay, L., MacKenzie, K., Hayes, P., Close, T.J., Muehlbauer, G., Stein, N. and Waugh, R. (2011). Patterns of polymorphism and linkage disequilibrium in cultivated barley. Theoretical and Applied Genetics 122, 523-531.

Cornulier, T., Robinson, R.A., Elston, D.A., Lambin, X., Sutherland, W.J. and Benton, T.G. (2011). Bayesian reconstitution of environmental change from disparate historical records: hedgerow loss and farmland bird declines. Methods in Ecology and Evolution 2(1), 86-94.

de Roos, B., Wanders, A.J., Wood, S., Horgan, G.W., Rucklidge, G., Reid, M., Siebelink, E. and Brouwer, I.A. (2011). A high intake of industrial or ruminant trans fatty acids does not affect the plasma proteome in healthy men. Proteomics 11(19), 3928-3934.

Deflorio, G., Horgan, G.W., Woodward, S. and Fossdal, C.G. (2011). Gene expression profiles, phenolics and lignin of Sitka spruce bark and sapwood before and after wounding and inoculation with Heterobasidion annosum. Physiological and Molecular Plant Pathology 75(4), 180-187.

Dicker, A., Nath, M., Yaga, R., Nisbet, A.J., Lainson, F.A., Gilleard, J.S. and Skuce, P.J. (2011). Teladorsagia circumcincta: the transcriptomic response of a multi-drug-resistant isolate to ivermectin exposure in vitro. Experimental Parasitology 127(2), 351-356.

Dolan, A., MacFarlane, S.A., McGavin, W.J., Brennan, R.M. and McNicol, J.W. (2011). Blackcurrant reversion virus - validation of an improved diagnostic test, accelerating testing in breeding and certification of blackcurrants. Journal of Berry Research 1(4), 201-208.

Drew, J.E., Mayer, C-D., Farquharson, A.J., Young, P. and Barrera, L.N. (2011). Custom design of a GeXP multiplexed assay used to assess expression profiles of inflammatory gene targets in normal colon, polyp, and tumor tissue. Journal of Molecular Diagnostics 13(2), 233-242.

Elston, D.A., Nevison, I.M., Sier, A.R.J., Scott, A.W. and Morecroft, M.D. (2011). Power calculations for monitoring studies: a case study with alternative models for random variation. Environmetrics 22(5), 618-625.

Evans, J., Knight, H.I., McKendrick, I.J., Stevenson, H., Barbudo, A.V., Gunn, G.J. and Low, J.C. (2011). Prevalence of Escherichia coli O157:H7 and serogroups O26, O103, O111 and O145 in sheep presented for slaughter in Scotland. Journal of Medical Microbiology 60, 653-660.

Forbes, A.B., Ramage, C., Sales, J., Baggott, D. and Donachie, W. (2011). Determination of the duration of antibacterial efficacy following administration of gamithromycin using a bovine Mannheimia haemolytica challenge model. Antimicrobial Agents and Chemotherapy 55(2), 831-835.

Fox, N., White, P.C.L., McClean, C.J., Marion, G., Evans, A. and Hutchings, M.R. (2011). Predicting impacts of climate change on Fasciola hepatica risk. PLoS ONE 6(1), e16126.

Frederiksen, M., Elston, D.A., Edwards, M., Mann, A.D. and Wanless, S. (2011). Mechanisms of long-term decline in size of lesser sandeels in the North Sea explored using a growth and phenology model. Marine Ecology Progress Series 432, 137-147.

Graham, J., Hackett, C.A., Smith, K., Woodhead, M., MacKenzie, K., Tierney, I., Cooke, D.E.L., Bayer, M.M. and Jennings, S.N. (2011). Towards an understanding of the nature of resistance to Phytophthora root rot in red raspberry. Theoretical and Applied Genetics 123, 585-601.

Grzegorczyk, M., Husmeier, D. and Rahnenführer, J. (2011). Modelling non-stationary dynamic gene regulatory processes with the BGM model. Computational Statistics 26(2), 199-218.

Grzegorczyk, M. and Husmeier, D. (2011). Non-homogeneous dynamic Bayesian networks for continuous data. Machine Learning 83(3), 355-419.

Grzegorczyk, M. and Husmeier, D. (2011). Improvements in the reconstruction of time-varying gene regulatory networks: dynamic programming and regularization by information sharing among genes. Bioinformatics 27(5), 693-699.

Heller, J., Innocent, G.T., Denwood, M.J., Reid, S.W.J., Kelly, L. and Mellor, D.J. (2011). Assessing the probability of acquisition of meticillin-resistant Staphylococcus aureus (MRSA) in a dog using a nested stochastic simulation model and logistic regression sensitivity analysis. Preventive Veterinary Medicine 9(2-4), 211-224.

Horgan, G.W. (2011). The behaviour of a neutral model of weight regulated only by body mass. Journal of Theoretical Biology 270(1), 1-6.

Iason, G.R., O'Reilly-Wapstra, J.M., Brewer, M.J., Summers, R.W. and Moore, B.D. (2011). Do multiple herbivores maintain chemical diversity of Scots pine monoterpenes. Philosophical Transactions of the Royal Society B: Biological Sciences 366, 1337-1345.

Jiang, N., Wang, M., Jia, T., Wang, L., Leach, L., Hackett, C.A., Marshall, D. and Luo, Z.W. (2011). A robust statistical method for association-based eQTL analysis. PLoS ONE 6(8), e23192.

Johnstone, A.M., Lobley, G.E., Horgan, G.W., Bremner, D.M., Fyfe, C., Morrice, P.C. and Duthie, G.G. (2011). Effects of a high-protein, low-carbohydrate v. high-protein, moderate-carbohydrate weight-loss diet on antioxidant status, endothelial markers and plasma indices of the cardiometabolic profile. British Journal of Nutrition 106(2), 282-291.

Kuester, E., Bierman, S., Klotz, S. and Kühn, I. (2011). Modelling the impact of climate and land use change on the geographical distribution of leaf anatomy in a temperate flora. Ecography 34, 507-518.

Lambe, N.R., Richardson, R.I., Macfarlane, J.M., Nevison, I.M., Haresign, W., Matika, O. and Bunger, L. (2011). Genotypic effects of the Texel Muscling QTL (TM-QTL) on meat quality in purebred Texel lambs. Meat Science 89, 125-132.

Lapierre, H., Vazquez-Anon, M., Parker, D., Dubreuil, P., Holtrop, G. and Lobley, G.E. (2011). Metabolism of 2-hydroxy-4-(methylthio)butanoate (HMTBA) in lactating dairy cows. Journal of Dairy Science 94(3), 1526-1535.

Lawson, D.J., Holtrop, G. and Flint, H.J. (2011). Bayesian analysis of non-linear differential equation models with application to a gut microbial ecosystem. Biometrical Journal 53, 543-556.

Lewis, F.I., Butler, A. and Gilbert, L. (2011). A unified approach to model selection using the likelihood ratio test. Methods in Ecology and Evolution 2(2), 155-162.

Lewis, F.I., Brulisauer, F., Cousens, C., McKendrick, I.J. and Gunn, G.J. (2011). Diagnostic accuracy of PCR for Jaagsiekte sheep retrovirus using field data from 125 Scottish sheep flocks. Veterinary Journal 187, 104-108.

Liu, H., McNicol, J.W., Bayer, M.M., Morris, J.A., Cardle, L., Marshall, D., Schulte, D., Stein, N., Shi, B-J., Taudien, S., Waugh, R. and Hedley, P.E. (2011). Highly parallel gene-to-BAC addressing using microarrays. Biotechniques 50(3), 165-174.

Liu, J., Francis, B. and Soothill, K. (2011). A longitudinal study of escalation in crime seriousness. Journal of Quantitative Criminology 27(2), 175-196.

Marcon, M., Mariano, K., Braga, R., Paglis, C., Scalco, M. and Horgan, G.W. (2011). Estimation of total leaf area in perennial plants using image analysis. Revista Brasileira de Engenharia Agrícola e Ambiental 15(1), 96-101.

Martin-Fernandez, J.A., Palarea Albaladejo, J. and Barcelo-Vidal, C. (2011). Técnicas composicionales para concentraciones geoquímicas por debajo del límite de detección. Boletin Instituto Geologico y Minero de España 122(4), 459-468.

Mayer, C-D., Lorent, J. and Horgan, G.W. (2011). Exploratory analysis of multiple omics datasets using the adjusted RV coefficient. Statistical Applications in Genetics and Molecular Biology 10(1).

McGeoch, S.C., Holtrop, G., Fyfe, C., Lobley, G.E., Pearson, D.W.M., Abraham, P., Megson, I.L., MacRury, S.M. and Johnstone, A.M. (2011). Food intake and dietary glycaemic index in free-living adults with and without type 2 diabetes mellitus. Nutrients 3, 683-693.

McLean, M.H., Murray, G.I., Stewart, K.N., Norrie, G., Mayer, C-D., Hold, G.L., Thompson, J., Fyfe, N., Hope, M., Mowat, N.A., Drew, J.E. and El-Omar, E. (2011). The inflammatory microenvironment in colorectal neoplasia. PLoS ONE 6(1), e15366.

Mulder, I.E., Schmidt, B., Lewis, M., Delday, M.I., Stokes, C.R., Bailey, M., Aminov, R.I., Gill, B.P., Pluske, J.R., Mayer, C-D. and Kelly, D. (2011). Restricting microbial exposure in early life negates the immune benefits associated with gut colonization in environments of high microbial diversity. PLoS ONE 6(12), e28279.

Nevison, I.M. and Roberts, A.M.I. (2011). Predicting distinctness decisions after one growing cycle. Biuletyn Oceny Odmian 33, 35-47.

Nilaweera, K.N., Herwig, A., Bolborea, M., Campbell, G., Mayer, C-D., Morgan, P.J., Ebling, F.J.P. and Barrett, P. (2011). Photoperiodic regulation of glycogen metabolism, glycolysis, and glutamine synthesis in tanycytes of the Siberian hamster suggests novel roles of tanycytes in hypothalamic function. GLIA 59(11), 1695-1705.

Nunn, F.G., Burgess, S.T.G., Innocent, G.T., Nisbet, A.J., Bates, P. and Huntley, J.F. (2011). Development of a serodiagnostic test for sheep scab using recombinant protein, Pso o 2. Molecular and Cellular Probes 25(5-6), 212-218.

Ostertag, L.M., O'Kennedy, N., Horgan, G.W., Kroon, P.A., Duthie, G.G. and de Roos, B. (2011). In vitro anti-platelet effects of simple plant-derived phenolic compounds are only found at high, non-physiological concentrations. Molecular Nutrition & Food Research 55(11), 1624-1636.

Ramsay, L., Comadran, J., Druka, A., Marshall, D.F., Thomas, W.T.B., Macaulay, M., MacKenzie, K., Simpson, C.G., Fuller, J., Bonar, N., Hayes, P., Lundqvist, U., Franckowiak, J.D., Close, T., Muehlbauer, G. and Waugh, R. (2011). Intermedium-C, a modifier of lateral spikelet fertility in barley, is an ortholog of the maize domestication gene TEOSINTE BRANCHED 2. Nature Genetics 43, 169-172.

Rhind, S.M., Kyle, C.E., Mackie, C., Yates, K. and Duff, E.I. (2011). Geographic variation in tissue accumulation of endocrine disrupting compounds (EDCs) in grazing sheep. Environmental Pollution 159(2), 416-422.

Rubio-Aliga, I., de Roos, B., Duthie, S.J., Crosley, K., Mayer, C-D., Horgan, G.W., Colquhoun, I., Le Gall, G., Huber, F., Kremer, W., Rychlik, M., Wopereis, S., van Ommen, B., Schmidt, G., Heim, C., Bouwman, F.G., Mariman, E.C., Mulholland, F., Johnson, I.T., Polley, A.C., Elliot, R.M. and Daniel, H. (2011). Metabolomics of prolonged fasting in humans reveals new catabolic markers. Metabolomics 7(3), 375-87.

Russell, J.R., Bayer, M., Booth, C., Cardle, L., Hackett, C.A., Hedley, P.E., Jorgenson, L. and Brennan, R.M. (2011). Identification, utilisation and mapping of novel transcriptome-based markers from blackcurrant (Ribes nigrum). BMC Plant Biology 11(147), doi:10.1186/1471-2229-11-147.

Russell, W., Gratz, S.W., Duncan, S.H., Holtrop, G., Ince, J., Scobbie, L., Duncan, G., Johnstone, A.M., Lobley, G.E., Wallace, R.J., Duthie, G.G. and Flint, H.J. (2011). High-protein, reduced-carbohydrate weight-loss diets promote metabolite profiles likely to be detrimental to colonic health. American Journal of Clinical Nutrition 93(5), 1062-2072.

Sait, M., Clark, E.M., Wheelhouse, N., Spalding, L., Livingstone, M., Sachseh, K., Markey, B.K., Magnino, S., Siarkou, V.I., Vretou, E., Caro, M.R., Yaga, R., Lainson, F.A., Smith, D.G.E., Wright, F. and Longbottom, D. (2011). Genetic variability of Chlamydophila abortus strains assessed by PCR-RFLP analysis of polymorphic membrane protein-encoding genes. Veterinary Microbiology 151(3-4), 284-290.

Sandilands, V., Brocklehurst, S., Sparks, N., Baker, L., McGovern, R., Thorp, B. and Pearson, D. (2011). Assessing leg health in chickens using a force plate and gait scoring: how many birds is enough. Veterinary Record 168(3), 77.

Scott, V., Kettle, H. and Merchant, C.J. (2011). Sensitivity analysis of an ocean carbon cycle model in the North Atlantic: an investigation of parameters affecting the air-sea CO2 flux, primary production and export of detritus. Ocean Science 7(3), 405-419.

Scott, K.P., Martin, J.C., Chassard, C., Clerget, M., Potrykus, J., Campbell, G., Mayer, C-D., Young, P., Rucklidge, G., Ramsay, A.G. and Flint, H.J. (2011). Substrate-driven gene expression in Roseburia inulinivorans: importance of inducible enzymes in the utilization of inulin and starch. Proceedings of the National Academy of Sciences USA 108, 4672-4679.

Spezia, L., Futter, M.N. and Brewer, M.J. (2011). Periodic multivariate Normal hidden Markov models for the analysis of water quality time series. Environmetrics 22, 304-317.

Tolkamp, B.J., Allcroft, D.J., Barrio, J.P., Bley, T.A.G., Howie, J.A., Jacobsen, T.B., Morgan, C.A., Schweitzer, D.P.N., Wilkinson, S., Yeates, M.P. and Kyriazakis, I. (2011). The temporal structure of feeding behaviour. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology 301, R378-R393.

Vinten, A.J.A., Artz, R.R.E., Thomas, N., Potts, J.M., Avery, L., Langan, S.J., Watson, H., Cook, Y., Taylor, C., Abel, C., Reid, E.J. and Singh, B.K. (2011). Comparison of microbial community assays for the assessment of stream biofilm ecology. Journal of Microbiological Methods 85(3), 190-198.

Vinuela-Fernandez, I., Jones, E., McKendrick, I.J. and Molony, V. (2011). Quantitative assessment of increased sensitivity of chronic laminitic horses to hoof-tester evoked pain. Equine Veterinary Journal 43(1), 62-68.

Walker, A.W., Ince, J., Duncan, S.H., Webster, L.M., Holtrop, G., Ze, X.L., Brown, D.S., Stares, M.D., Scott, P., Bergerat, A., Louis, P., McIntosh, F., Johnstone, A.M., Lobley, G.E., Parkhill, J. and Flint, H.J. (2011). Dominant and diet-responsive groups of bacteria within the human colonic microbiota. International Society for Microbial Ecology Journal 5(2), 220-230.

Category: "Book Chapter"

Brewer, M.J., Sulkava, M., Mäkinen, H., Korpela, M., Nöjd, P. and Hollmén, J. (2011). Logistic fitting method for detecting onset and cessation of tree stem radius increase. In "Intelligent Data Engineering and Automated Learning - IDEAL 2011", 204-211. Eds. H. Yin, W. Wang, V. Rayward-Smith. Springer Verlag, Heidelberg.

Brewer, M.J., O'Hara, R.B., Anderson, B.J. and Ohlemüller, R. (2011). Climate Envelopes for Species Distribution Models. In "26th International Workshop on Statistical Modelling", 93-98. Eds. Conesa, D., Forte, A., López-Quílez, A. and Muñoz, F.. IWSM 2011, Valencia, Spain.

Bunger, L., Macfarlane, J.M., Lambe, N.R., Conington, J., McLean, K.A., Moore, K., Glasbey, C.A. and Simm, G. (2011). Use of X-ray computed tomography (CT) in UK sheep production and breeding. In "CT Scanning". Eds. K. Subburaj. InTech - an Open Access publisher.

Dondelinger, F., Aderhold, A., Lebre, S., Grzegorczyk, M. and Husmeier, D. (2011). A Bayesian regression and multiple changepoint model for systems biology. In "International Workshop on Statistical Modelling (IWSM)", 189-194. Copiformes S.L..

Husmeier, D., Werhli, A.V. and Grzegorczyk, M. (2011). Advanced applications of Bayesian networks in systems biology. In "Handbook of Statistical Systems Biology", V13,270-289. Eds. Stumpf M, Balding D J, Girolami M. Wiley.

Husmeier, D., Dondelinger, F. and Lebre, S. (2011). Inter-time segment information sharing for non-homogeneous dynamic Bayesian networks. In "Proceedings of the twenty-fourth annual conference on Neural Information Processing Systems (NIPS).", 901-909. Eds. Lafferty, J et al.:. Curran Associates.

Lin, K., Husmeier, D., Dondelinger, F., Mayer, C-D., Liu, H., Pritchard, L., Salmond, G., Toth, I.K. and Birch, P.R.J. (2011). Reverse engineering gene regulatory networks related to quorum sensing in the plant pathogen Pectobacterium atrosepticum. In "Computational Biology", 253-281. Eds. David Fenyo. Humana Press.

Martin-Fernandez, J.A., Palarea Albaladejo, J. and Olea, R.A. (2011). Dealing with zeros. In "Compositional data analysis. Theory and Applications", 43-58. Eds. Pawlowsky-Glahn, V. & Buccianti, A.. Wiley, London, UK.

Palarea Albaladejo, J., Martin-Fernandez, J.A. and Olea, R.A. (2011). Non-detect bootstrap method for estimating distributional parameters of compositional samples revisited: a multivariate approach. In "Proceedings of The Fourth Compositional Data Workshop, CODAWORK'11". Eds. Egozcue, J.J., Tolosana-Delgado, R., Ortego, M.I.. Universitat de Girona.

Palarea Albaladejo, J. and Martin-Fernandez, J.A. (2011). Examining distance-based grouping on the simplex sample space: the fuzzy clustering case. In "26th International Workshop on Statistical Modelling, IWSM 2011", 450-453. Eds. Conesa, D., Forte, A., López-Quilez, A., Muñoz, F.. Universitat de Valencia.

Potts, J.M. (2011). Basic Concepts. In "Forecast Verification: A Practitioner's Guide in Atmospheric Science, 2nd Edition", 11-28. Eds. Jolliffe, I.T. and Stephenson, D.B.. Wiley, Chichester.

Rushworth, A.M., Bowman, A.W., Brewer, M.J. and Langan, S.J. (2011). Distributed lag models for hydrological data. In "26th International Workshop on Statistical Modelling", 529-533. Eds. Conesa, D., Forte, A., López-Quílez, A. and Muñoz, F. IWSM 2011, Valencia, Spain.

Song, Y., Glasbey, C.A., van der Heijden, G.W.A.M., Polder, G. and Dieleman, A. (2011). Combining stereo and Time-of-Flight images with application to automatic plant phenotyping. In "Proceedings of the 17th Scandinavian Conference on Image Analysis (SCIA 2011)", 467-478. Eds. Heyden, Anders and Kahl, Fredrik. Springer Verlag, Berlin.













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