Search results for year 2009

Result count: 70

Published:

Category: "Refereed journal"

Baggaley, N.J., Langan, S.J., Futter, M.N., Potts, J.M. and Dunn, S.M. (2009). Long term trends in hydro-climatology of a major Scottish mountain river. Science of the Total Environment 407(16), 4633-4641.

Bartley, P.M., Wright, S.E., Maley, S.W., Buxton, D.A., Nath, M. and Innes, E.A. (2009). The development of immune responses in Balb/c mice following inoculation with attenuated or virulent Neospora caninum tachyzoites. Parasite Immunology 31(7), 392-401.

Bierman, S. and Glasbey, C.A. (2009). A graphical method for dating chicks using bivariate body measurements. Journal of Agricultural, Biological, and Environmental Statistics 14, 443-451.

Blanchet, J. and Vignes, M. (2009). A model-based approach to gene clustering with missing observation reconstruction in a Markov Random Field framework. Journal of Computational Biology 16(3), 475-486.

Brennan, R.M., Jorgensen, L., Gordon, S., Loades, K., Hackett, C.A. and Russell, J.R. (2009). The development of a PCR-based marker linked to resistance to the blackcurrant gall mite (Cecidophyopsis ribis Acari: Eriophyidae). Theoretical and Applied Genetics 118(2), 205-211.

Brown, K.L., Wathne, G.J., Sales, J., Bruce, M.E. and Mabbott, N.A. (2009). The effects of host age on follicular dendritic cell status dramatically impair scrapie agent neuroinvasion in aged mice. Journal of Immunology 183, 5199-5207.

Butler, A., Doherty, R. and Marion, G. (2009). Model averaging to combine simulations of future global vegetation carbon stocks. Environmetrics 20(7), 791-811.

Comadran, J., Thomas, W.T.B., van Eeuwijk, F., Ceccarelli, S., Grando, S., Stanca, A.M., Pecchiono, N., Akar, T., Al-Yassin, A., Benbelkacem, A., Ouabbou, H., Bort, J., Romagosa, I., Hackett, C.A. and Russell, J.R. (2009). Patterns of genetic diversity and linkage disequilibrium in a highly structured Hordeum vulgare association-mapping population for the Mediterranean basin. Theoretical and Applied Genetics 119, 175-187.

Cornulier, T., Elston, D.A., Arcese, P., Benton, T., Douglas, D.J.T., Lambin, X., Reid, J., Robinson, R.A. and Sutherland, W.J. (2009). Estimating the annual number of breeding attempts from breeding dates using mixture models. Ecology Letters 12(11), 1184-1193.

Cousens, C., Thonur, L., Imlach, S., Crawford, J., Sales, J. and Griffiths, D.J. (2009). Jaagsiekte sheep retrovirus is present at high concentration in lung fluid produced by ovine pulmonary adenocarcinoma-affected sheep and can survive for several weeks at ambient temperatures. Research in Veterinary Science 87, 154-156.

Crosley, K., Duthie, S.J., Polley, A.C., Bouwman, F.G., Heim, C., Mulholland, F., Horgan, G.W., Johnson, I.T., Mariman, E., Elliott, R., Daniel, H. and de Roos, B. (2009). Variation in protein levels obtained from human blood cells and biofluids for platelet, peripheral blood mononuclear cell, plasma, urine and saliva proteomics. Genes and Nutrition 4(2), 95-102.

Davidson, R.S., Marion, G., White, P.C.L. and Hutchings, M.R. (2009). Use of host population reduction to control wildlife infection: rabbits and paratuberculosis. Epidemiology and Infection 137, 131-138.

de Roos, B., Rungapamestry, V., Ross, K., Rucklidge, G., Reid, M., Duncan, G., Horgan, G.W., Toomey, S., Browne, J., Loscher, C., Mills, K.H.G. and Roche, H.M. (2009). Attenuation of inflammation and cellular stress-related pathways maintains insulin sensitivity in obese type I interleukin-1 receptor knockout mice on a high-fat diet. Proteomics 9(12), 3244-3256.

Eaton, S.L., Anderson, M.J., Hamilton, S., Gonzalez, L., Sales, J., Jeffrey, M., Reid, H.W., Rocchi, M.S. and Chianini, F. (2009). CD21 B cell populations are altered following subcutaneous scrapie inoculation in sheep. Veterinary Immunology and Immunopathology 131, 105-109.

Gambling, L., Czopek, A., Andersen, H.S., Holtrop, G., Srai, K.S., Krejpcio, Z. and McArdle, H.J. (2009). Fetal iron status regulates maternal iron metabolism during pregnancy in the rat. American Journal of Physiology - Regulatory, Integrative and Comparative Physiology 296(4), R1063-R1070.

Glasbey, C.A. (2009). Two-dimensional generalisations of dynamic programming for image analysis. Statistics and Computing 19, 49-56.

Glasbey, C.A. and Khondoker, M.R. (2009). Efficiency of functional regression estimators for combining multiple laser scans of cDNA microarrays. Biometrical Journal 51, 45-55.

Graham, J., Hackett, C.A., Smith, K., Woodhead, M., Hein, I. and McCallum, S. (2009). Mapping QTLs for developmental traits in raspberry from bud break to ripe fruit. Theoretical and Applied Genetics 118(6), 1143-1155.

Grelet, G.A., Meharg, A.A., Duff, E.I., Anderson, I.C. and Alexander, I.J. (2009). Small genetic differences between ericoid mycorrhizal fungi affect nitrogen uptake by Vaccinium. New Phytologist 181, 708-718.

Hopkins, D.W., Waite, I.S., McNicol, J.W., Poulton, P.R., MacDonald, A.J. and O'Donnell, A.G. (2009). Soil organic carbon contents in long-term experimental grassland plots in the UK (Palace Leas and Park Grass) have not changed consistently in recent decades. Global Change Biology 15, 1739-1754.

Johnson, S.N. and McNicol, J.W. (2009). Elevated CO2 and aboveground-belowground herbivory by the clover root weevil. Oecologia 162, 209-216.

Kassim, A., Poette, J., Paterson, A., Zait, D., McCallum, S., Woodhead, M., Smith, K., Hackett, C.A. and Graham, J. (2009). Environmental and seasonal influences on red raspberry anthocyanin antioxidant contents and identification of QTL. Molecular Nutrition & Food Research 53, 625-634.

Kettle, H. (2009). Using satellite-derived backscattering coefficients in addition to chlorophyll data to constrain a simple marine biogeochemical model. BioGeosciences 6, 1591-1601.

Kohn, D., Hulme, P.E., Hollingsworth, P.M. and Butler, A. (2009). Are native bluebells(Hyacinthoides non-scripta) at risk from alien congenerics? Evidence from distributions and co-occurrence in Scotland. Biological Conservation 142(1), 61-74.

Lawson, D.J. and Jensen, H.J. (2009). The role of weak selection and high mutation rates in nearly neutral evolution. Journal of Theoretical Biology 257(4), 696-703.

Lehrach, W.P. and Husmeier, D. (2009). Segmenting bacterial and viral DNA sequence alignments with a transdimensional phylogenetic factorial hidden Markov model. Applied Statistics 58(3), 307-327.

Lewis, F.I., Gunn, G.J., McKendrick, I.J. and Murray, F.M. (2009). Bayesian inference for within-herd prevalence of Leptospira interrogans serovar Hardjo using bulk milk antibody testing. Biostatistics 10(4), 719-728.

Lewis, S., Elston, D.A., Daunt, F., Cheney, B. and Thompson, P.M. (2009). Effects of extrinsic and intrinsic factors on breeding success in a long lived seabird. Oikos 118, 521-528.

Lin, K. and Husmeier, D. (2009). Modelling transcriptional regulation with a mixture of factor analyzers and variational Bayesian expectation maximization. EURASIP Journal on Bioinformatics and Systems Biology 2009(doi:10.1155/2009/601068), ID 601068.

Low, J.C., Chambers, J., McKelvey, W.A.C., McKendrick, I.J. and Lasswade, J.M. (2009). Failure to transmit scrapie infection by transferring preimplantation embryos from naturally infected donor sheep. Theriogenology 72(6), 809-816.

Mahajan, A., Currie, C.G., Mackie, S., Tree, J., McAteer, S., McKendrick, I.J., McNeilly, T., Roe, A., La Ragione, R.M., Woodward, M.J., Gally, D.L. and Smith, D.G.E. (2009). An investigation of the expression and adhesin function of H7 flagella in the interaction of Escherichia coli O157:H7 with bovine intestinal epithelium. Cellular Microbiology 11(1), 121-137.

Marot, G. and Mayer, C-D. (2009). Sequential analysis for microarray data based on sensitivity and meta-analysis. Statistical Applications in Genetics and Molecular Biology 8(1).

Marot, G., Foulley, J.L., Mayer, C-D. and Jaffrezic, F. (2009). Moderated effect size and p-value combinations for microarray meta-analyses. Bioinformatics 25(20), 2692-2699.

McKenzie, B., Kuhner, S., MacKenzie, K., Peth, S. and Horn, R. (2009). Soil compaction by uniaxial loading and the survival of the earthworm Aporrectodea caliginosa. Soil and Tillage Research 104, 320-323.

McKenzie, B., Bengough, A.G., Hallett, P., Thomas, W.T.B., Forster, B.P. and McNicol, J.W. (2009). Deep rooting and drought screening of cereal crops: a novel field-based method and its application. Field Crops Research 112, 165-171.

Milne, I., Lindner, D., Bayer, M.M., Husmeier, D., McGuire, G., Marshall, D.F. and Wright, F. (2009). TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25(1), 126-127.

Moir, H.J., Gibbins, C.N., Buffington, J.M., Webb, J.H., Soulsby, C. and Brewer, M.J. (2009). A new method to identify the fluvial regimes used by spawning salmonids. Canadian Journal of Fisheries and Aquatic Sciences 66, 1404-1408.

Montiero, A.R., Anderson, T.J., Innocent, G.T., Evans, N.P. and Penderis, J. (2009). Variations in serum concentration of phenobarbitone in dogs receiving regular twice daily doses in relation to the times of administration. Veterinary Record 165(19), 556-558.

Mulder, I.E., Schmidt, B., Stokes, C.R., Lewis, M., Bailey, M., Aminov, R.I., Prosser, J.I., Gill, P., Mayer, C-D., Musk, C. and Kelly, D. (2009). Environmentally-acquired bacteria influence microbial diversity and natural innate immune responses at gut surfaces. BMC Biology 7(79).

Nilaweera, K.N., Archer, Z., Campbell, G., Mayer, C-D., Balik, A., Ross, A.W., Mercer, J., Ebling, F.J.P. and Morgan, P.J. (2009). Photoperiod regulates genes encoding melanocortin 3 and serotonin receptors and secretogranins in the dorsomedial posterior arcuate of the Siberian hamster. Journal of Neuroendocrinology 21(2), 123-31.

Parsons, N.R., Edmondson, R. and Song, Y. (2009). Image analysis and statistical modelling for measurement and quality assessment of ornamental horticulture crops in glasshouses. Biosystems Engineering 104(2), 161-168.

Pearce, M.C., Chase-Topping, M.E., McKendrick, I.J., Mellor, D.J., Locking, M., Allison, L.J., Ternent, H., Matthews, L., Knight, H.I., Smith, A.W., Synge, B.A., Reilly, W., Low, J.C., Reid, S.W.J., Gunn, G.J. and Woolhouse, M.E.J. (2009). Temporal and spatial patterns of bovine Escherichia coli O157 prevalence and comparison of temporal changes in the patterns of phage types associated with bovine shedding and human E. coli O157 cases in Scotland between 1998-2000 and 2002. BioMed Central Microbiology 9(276).

Polechová, J., Barton, N. and Marion, G. (2009). Species range: adaptation in space and time. American Naturalist 174(5), E186-204.

Potts, J.M., Chapman, S.J., Towers, W. and Campbell, C.D. (2009). Comments on 'Baseline values and change in the soil, and implications for monitoring' by R.M. Lark, P.H. Bellamy and G.J.D. Kirk. European Journal of Soil Science 60(3), 481-483.

Ramirez, C., Slezak, K., Fuller, Z., Duncan, A.J., Holtrop, G. and Louis, P. (2009). Effect of inulin on the human gut microbiota: stimulation of Bifidobacterium adolescentis and Faecalibacterium prausnitzii. British Journal of Nutrition 101, 541-550.

Rendle, D.I., Heller, J., Hughes, K.J., Innocent, G.T. and Durham, A.E. (2009). Stability of common biochemistry analytes in equine blood stored at room temperature. Equine Veterinary Journal 41(5), 428-432.

Scott, D., Welch, D. and Elston, D.A. (2009). Long-term effects of leader browsing by deer on the growth of Sitka spruce (Picea sitchensis). Forestry 82, 387-401.

Smith, L., White, P.C.L., Marion, G. and Hutchings, M.R. (2009). Livestock grazing behaviour and inter- vs intra-specific disease risk via the faecal oral route. Behavioral Ecology 20, 426-432.

Smith, L., Marion, G., Swain, D.L., White, P.C.L. and Hutchings, M.R. (2009). Inter- and intra-specific exposure to parasites and pathogens via the faecal-oral route: a consequence of behaviour in a patchy environment. Epidemiology and Infection 137, 630-643.

Smith, L., Marion, G., Swain, D.L., White, P.C.L. and Hutchings, M.R. (2009). The effect of grazing management on livestock disease risk via the faecal-oral route. Preventive Veterinary Medicine 91, 95-106.

Smith, S., Nisbet, A.J., Meikle, L., Inglis, N.F., Sales, J., Beynon, R.J. and Matthews, J.B. (2009). Proteomic analysis of excretory/secretory products released by Teladorsagia circumcinta larvae early post-infection. Parasite Immunology 31(1), 10-19.

Spezia, L. (2009). Reversible jump and the label switching problem in hidden Markov models. Journal of Statistical Planning and Inference 139, 2305-2315.

Tsofliou, F., Fyfe, C., Matheson, I., Jackson, D., Horgan, G.W., Wahle, K.W., Ahren, B., Williams, L. and Sneddon, A. (2009). Modulation of fasted and postprandial plasma lipids in healthy volunteers by a dietary mixture of omega-3 fatty acids and conjugated linoleic acid. Journal of Food Lipids 16, 499-513.

Vinten, A.J.A., Potts, J.M., Avery, L. and Strachan, N.J.C. (2009). Microbial pollution of water by livestock: approaches to risk assessment and mitigation. Animal 3(5), 744-752.

Wemelsfelder, F., Nevison, I.M. and Lawrence, A.B. (2009). The effect of perceived environmental background on qualitative assessments of pig behaviour. Animal Behaviour 78(2), 477-484.

Wilson, F.A., van den Borne, J.J.G.C., Calder, A.G., O'Kennedy, N., Holtrop, G., Rees, W.D. and Lobley, G.E. (2009). Tissue methionine cycle activity and homocysteine metabolism in female rats: impact of dietary methionine and folate plus choline. American Journal of Physiology - Endocrinology and Metabolism 296, E702-E713.

Wright, H., Bartley, K., Nisbet, A.J., McDevitt, R., Sparks, N., Brocklehurst, S. and Huntley, J.F. (2009). The testing of antibodies raised against poultry red mite antigens in an in vitro feeding assay; preliminary screen for vaccine candidates. Experimental & Applied Acarology 48, 81-91.

Category: "Book Chapter"

Bridle, J.R., Polechová, J. and Vines, T.H. (2009). Patterns of biodiversity and limits to adaptation in time and space. In "Evolution and Speciation", 77-101. Eds. RK Butlin, JR Bridle, and D Schluter. Cambridge University Press.

Caley, P., Marion, G. and Hutchings, M.R. (2009). Assessment of transmission rates and routes, and the implications for management. In "Management of Disease in Wild Mammals", 31-52. Eds. RJ Delahay, GC Smith & MR Hutchings. Springer Verlag.

Denwood, M.J., Reid, S.W.J., Love, S., Nielsen, M.K., Matthews, L., McKendrick, I.J. and Innocent, G.T. (2009). Use and validation of a novel MCMC method of analysis for faecal egg count reduction test data. In "Proceedings of the Society for Veterinary Epidemiology and Preventive Medicine", 151-160. SVEPM.

Grzegorczyk, M. and Husmeier, D. (2009). Avoiding spurious feedback loops in the reconstruction of gene regulatory networks with dynamic Bayesian networks. In "Pattern Recognition in Bioinformatics", 113-124. Eds. Kadirkamanathan, Sanguinetti, Girolami, Niranjan and Noirel. Springer Verlag.

Grzegorczyk, M. and Husmeier, D. (2009). Modelling non-stationary gene regulatory processes with a non-homogeneous dynamic Bayesian network and the change point process. In "Proceedings of the Sixth International Workshop on Computational Systems Biology (WCSB 2009)", 51-54. Eds. Manninen T, Wiuf C., Laehdesmaeki H., Grzegorczyk M., Rahnenfuehrer M., Ahdesmaeki M., Linne M.-J., Yli-Harja O.. Tampere International Center for Signal Processing.

Grzegorczyk, M. and Husmeier, D. (2009). Non-stationary continuous dynamic Bayesian networks. In "Advances in Neural Information Processing Systems (NIPS)", 682--690. Eds. Bengio, Schuurmans, Lafferty, Williams and Culotta. Curran Associates.

Heller, J., Innocent, G.T., Kelly, L., Reid, S.W.J. and Mellor, D.J. (2009). Quantitative risk assessment for the acquisition of Meticillin-resistant Staphylococcus aureus (MRSA) in dogs. In "Proceedings of the Society of Veterinary Epidemiology and Public Health", 23-34. SVEPM.

Mantzaris, A.V. and Husmeier, D. (2009). Distinguishing regional from within-codon rate heterogeneity in DNA sequence alignments. In "Pattern Recognition in Bioinformatics", 187-198. Eds. Kadirkamanathan, Sanguinetti, Girolami, Niranjan and Noirel. Springer Verlag.

Martin-Fernandez, J.A., Palarea Albaladejo, J. and Olea, R.A. (2009). Multivariate approach using bootstraping for the inference of distributional parameters of samples containing compositional values below the detection limit. In "31st Spanish Congress of Statistics and Operations Research". University of Murcia.

Morrisson, A.R., McColl, S.M., Dawson, L.A. and Brewer, M.J. (2009). Characterisation and discrimination of urban soils: preliminary results from the Soil Forensics University Network. In "Criminal and Environmental Soil Forensics", 75-86. Eds. Ritz, K., Dawson, L., Miller, D.. Springer Verlag, Heidelberg.

Palarea Albaladejo, J. and Martin-Fernandez, J.A. (2009). CODA approach for analyzing time use data. In "31st Spanish Congress of Statistics and Operations Research". University of Murcia.

Roberts, A.M.I. (2009). Smoothing methods. In "Phenological Research: methods for environmental and climate change analysis", 255-269. Eds. Keatley MR, Hudson IL. Springer Verlag.

Smith, G., Marion, G., Rushton, S., Pfeiffer, D., Thulke, H.H., Eisinger, D. and Hutchings, M.R. (2009). Modelling disease dynamics and management scenarios. In "Management of Disease in Wild Mammals", 53-78. Eds. RJ Delahay, GC Smith & MR Hutchings. Springer Verlag, Berlin.

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