Ab initio prediction of protein interactions
PhD project
Talks
General background
Databases
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Amino acid indices and similarity matrices
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DIP: Data base of interacting proteins
The DIP (Database of Interacting Proteins)
database lists protein pairs that are known to
interact
with each other, where "interacts" means that
two amino acid chains were experimentally
identified to bind to each other.
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BIND
Biomolecular Interaction Network Database
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Interpro
InterPro is a database of protein families, domains and functional sites in which identifiable
features found in known proteins can be applied
to unknown protein sequences.
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InterDom
InterDom is a database of putative interacting
protein domains derived from multiple sources,
ranging from domain fusions (Rosetta
Stone), protein interactions (DIP and BIND),
protein complexes (PDB), to scientific literature
(MEDLINE).
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BID: The binding interface database
This database presents data about the residues
that confer interactive function,
in contrast to BIND and DIP that catalogue
protein interaction networks.
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TRANSFAC
The Transcription Factor Data Base
Motif discovery: methods and software
Papers on proteins - general background
Papers on predicting protein interactions
Figures